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  "Package": "ggseg.formats",
  "Title": "Brain Atlas Data Structures for the 'ggsegverse' Ecosystem",
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  "Authors@R": "c(person(\"Athanasia Mo\", \"Mowinckel\", , \"a.m.mowinckel@psykologi.uio.no\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-5756-0223\")),\nperson(\"Center for Lifespan Changes in Brain and Cognition (LCBC), University of Oslo\",\nrole = \"cph\"))",
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    "as_ggseg_atlas",
    "as_polygon_atlas",
    "as_sf_atlas",
    "aseg",
    "atlas_context_remove",
    "atlas_core_add",
    "atlas_geom",
    "atlas_geometry_type",
    "atlas_labels",
    "atlas_meshes",
    "atlas_palette",
    "atlas_polygons",
    "atlas_region_contextual",
    "atlas_region_keep",
    "atlas_region_op",
    "atlas_region_remove",
    "atlas_region_rename",
    "atlas_regions",
    "atlas_sf",
    "atlas_type",
    "atlas_vertices",
    "atlas_view_gather",
    "atlas_view_keep",
    "atlas_view_remove",
    "atlas_view_remove_region",
    "atlas_view_remove_small",
    "atlas_view_reorder",
    "atlas_views",
    "brain_atlas",
    "brain_data_cortical",
    "brain_data_subcortical",
    "brain_data_tract",
    "brain_labels",
    "brain_regions",
    "brain_views",
    "convert_legacy_brain_atlas",
    "dk",
    "get_brain_mesh",
    "get_cerebellar_mesh",
    "ggseg_atlas",
    "ggseg_data_cerebellar",
    "ggseg_data_cortical",
    "ggseg_data_subcortical",
    "ggseg_data_tract",
    "is_atlas_polygon",
    "is_atlas_sf",
    "is_brain_atlas",
    "is_cerebellar_atlas",
    "is_cortical_atlas",
    "is_ggseg_atlas",
    "is_ggseg3d_atlas",
    "is_subcortical_atlas",
    "is_tract_atlas",
    "migrate_atlas_files",
    "read_atlas_files",
    "read_freesurfer_stats",
    "read_freesurfer_table",
    "suit",
    "tracula",
    "unify_legacy_atlases"
  ],
  "_help": [
    {
      "page": "as_ggseg_atlas",
      "title": "Coerce to ggseg atlas",
      "topics": [
        "as_brain_atlas",
        "as_ggseg_atlas"
      ]
    },
    {
      "page": "as_polygon_atlas",
      "title": "Convert a ggseg atlas to the sf-optional polygon representation",
      "topics": [
        "as_polygon_atlas"
      ]
    },
    {
      "page": "as_sf_atlas",
      "title": "Rehydrate a ggseg atlas into sf-backed form",
      "topics": [
        "as_sf_atlas"
      ]
    },
    {
      "page": "aseg",
      "title": "FreeSurfer Automatic Subcortical Segmentation Atlas",
      "concept": [
        "ggseg_atlases",
        "subcortical_atlases"
      ],
      "topics": [
        "aseg"
      ]
    },
    {
      "page": "atlas_geom",
      "title": "Get the raw 2D geometry of an atlas",
      "topics": [
        "atlas_geom"
      ]
    },
    {
      "page": "atlas_geometry_type",
      "title": "Classify or test an atlas's 2D geometry",
      "topics": [
        "atlas_geometry_type",
        "is_atlas_polygon",
        "is_atlas_sf"
      ]
    },
    {
      "page": "atlas_labels",
      "title": "Extract unique labels from an atlas",
      "topics": [
        "atlas_labels",
        "brain_labels"
      ]
    },
    {
      "page": "atlas_manipulation",
      "title": "Manipulate brain atlas regions and views",
      "topics": [
        "atlas_context_remove",
        "atlas_core_add",
        "atlas_manipulation",
        "atlas_region_contextual",
        "atlas_region_keep",
        "atlas_region_op",
        "atlas_region_remove",
        "atlas_region_rename",
        "atlas_view_gather",
        "atlas_view_keep",
        "atlas_view_remove",
        "atlas_view_remove_region",
        "atlas_view_remove_small",
        "atlas_view_reorder"
      ]
    },
    {
      "page": "atlas_meshes",
      "title": "Get atlas meshes for 3D rendering",
      "topics": [
        "atlas_meshes"
      ]
    },
    {
      "page": "atlas_palette",
      "title": "Get atlas palette",
      "topics": [
        "atlas_palette"
      ]
    },
    {
      "page": "atlas_polygons",
      "title": "Get atlas polygons for 2D rendering",
      "topics": [
        "atlas_polygons"
      ]
    },
    {
      "page": "atlas_regions",
      "title": "Extract unique region names from an atlas",
      "topics": [
        "atlas_regions",
        "brain_regions"
      ]
    },
    {
      "page": "atlas_sf",
      "title": "Get atlas data for 2D rendering",
      "topics": [
        "atlas_sf"
      ]
    },
    {
      "page": "atlas_type",
      "title": "Detect atlas type",
      "topics": [
        "atlas_type"
      ]
    },
    {
      "page": "atlas_vertices",
      "title": "Get atlas vertices for 3D rendering",
      "topics": [
        "atlas_vertices"
      ]
    },
    {
      "page": "atlas_views",
      "title": "Get available views in atlas",
      "topics": [
        "atlas_views",
        "brain_views"
      ]
    },
    {
      "page": "convert_legacy_brain_atlas",
      "title": "Convert legacy ggseg atlases to ggseg_atlas format",
      "topics": [
        "convert_legacy_brain_atlas",
        "unify_legacy_atlases"
      ]
    },
    {
      "page": "dk",
      "title": "Desikan-Killiany Cortical Atlas",
      "concept": [
        "cortical_atlases",
        "ggseg_atlases"
      ],
      "topics": [
        "dk"
      ]
    },
    {
      "page": "get_brain_mesh",
      "title": "Get brain surface mesh",
      "topics": [
        "get_brain_mesh"
      ]
    },
    {
      "page": "get_cerebellar_mesh",
      "title": "Get SUIT cerebellar surface mesh",
      "topics": [
        "get_cerebellar_mesh"
      ]
    },
    {
      "page": "ggseg_atlas",
      "title": "Constructor for ggseg atlas",
      "topics": [
        "brain_atlas",
        "ggseg_atlas"
      ]
    },
    {
      "page": "ggseg_data_cerebellar",
      "title": "Create cerebellar atlas data",
      "topics": [
        "ggseg_data_cerebellar"
      ]
    },
    {
      "page": "ggseg_data_cortical",
      "title": "Create cortical atlas data",
      "topics": [
        "brain_data_cortical",
        "ggseg_data_cortical"
      ]
    },
    {
      "page": "ggseg_data_subcortical",
      "title": "Create subcortical atlas data",
      "topics": [
        "brain_data_subcortical",
        "ggseg_data_subcortical"
      ]
    },
    {
      "page": "ggseg_data_tract",
      "title": "Create tract atlas data",
      "topics": [
        "brain_data_tract",
        "ggseg_data_tract"
      ]
    },
    {
      "page": "is_ggseg_atlas",
      "title": "Check ggseg atlas class",
      "topics": [
        "is_brain_atlas",
        "is_cerebellar_atlas",
        "is_cortical_atlas",
        "is_ggseg_atlas",
        "is_subcortical_atlas",
        "is_tract_atlas"
      ]
    },
    {
      "page": "is_ggseg3d_atlas",
      "title": "Check if object is a legacy ggseg3d atlas",
      "topics": [
        "is_ggseg3d_atlas"
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    },
    {
      "page": "migrate_atlas_files",
      "title": "Migrate atlas '.rda' files to the sf-optional polygon format",
      "topics": [
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    {
      "page": "read_atlas_files",
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      "topics": [
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    },
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      "title": "Read in raw FreeSurfer stats file",
      "topics": [
        "read_freesurfer_stats"
      ]
    },
    {
      "page": "read_freesurfer_table",
      "title": "Read in stats table from FreeSurfer",
      "topics": [
        "read_freesurfer_table"
      ]
    },
    {
      "page": "suit",
      "title": "SUIT Cerebellar Lobular Atlas",
      "concept": [
        "cerebellar_atlases",
        "ggseg_atlases"
      ],
      "topics": [
        "suit"
      ]
    },
    {
      "page": "tracula",
      "title": "TRACULA White Matter Tract Atlas",
      "concept": [
        "ggseg_atlases",
        "tract_atlases"
      ],
      "topics": [
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      ]
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