ggseg - Plotting Tool for Brain Atlases

Contains 'ggplot2' geom for plotting brain atlases using simple features. The largest component of the package is the data for the two built-in atlases. Mowinckel & Vidal-Piñeiro (2020) <doi:10.1177/2515245920928009>.

Last updated 2 years ago

11.52 score 215 stars 14 packages 538 scripts 687 downloads

ggseg3d - Tri-Surface Mesh Plots for Brain Atlases

Mainly contains a plotting function ggseg3d(), and data of two standard brain atlases (Desikan-Killiany and aseg). By far, the largest bit of the package is the data for each of the atlases. The functions and data enable users to plot tri-surface mesh plots of brain atlases, and customise these by projecting colours onto the brain segments based on values in their own data sets. Functions are wrappers for 'plotly'. Mowinckel & Vidal-Piñeiro (2020) <doi:10.1177/2515245920928009>.

Last updated 1 years ago

7.60 score 34 stars 13 packages 149 scripts 318 downloads

meetupr - Meetup R API

Provides access to data from <https:www.meetup.com> (see <https:www.meetup.com/meetup_api/> for more information).

Last updated 2 years ago

apiapi-wrappermeetupr-ladiesrladiesrladies-global

7.01 score 76 stars 85 scripts

nettskjemar - Connect to the 'nettskjema.no' API of the University of Oslo

Enables users to retrieve data, meta-data, and codebooks from <https://nettskjema.no/>. The data from the API is richer than from the online data portal. Mowinckel (2021) <doi:10.5281/zenodo.4745481>.

Last updated 3 years ago

4.75 score 2 stars 14 scripts 135 downloads

questionnaires - Package with functions to calculate components and sums for LCBC questionnaires

Creates summaries and factorials of answers to questionnaires.

Last updated 1 years ago

4.63 score 3 stars 13 scripts

ggsegExtra - Extra Utilities for the 'ggseg' and 'ggseg3d' Plotting Tools

Contains functions to create new data sets compatible with the 'ggseg' and 'ggseg3d' packages for plotting brain segmentations through R. Requires several external software to be installed on the system for atlas creations to work, and most of these are not available for windows. But atlas creation tools exist for 2d simple features data, and also 3d tri-surface mesh plots. Also has a list of compatible data sets and functions for easy installation of these.

Last updated 3 years ago

4.56 score 52 stars 70 scripts

tsdrtools - Convenience package for installing R-packages on UiO TSD

Some packages are hard to install on the secure closed server of the University of Oslo, TSD This package has some functions to help users more easily install packages to TSD that cannot be installed using the mini-CRAN service within TSD.

Last updated 2 years ago

4.18 score 6 stars 5 scripts

tsdrtools - Convenience package for installing R-packages on UiO TSD

Some packages are hard to install on the secure closed server of the University of Oslo, TSD This package has some functions to help users more easily install packages to TSD that cannot be installed using the mini-CRAN service within TSD.

Last updated 2 years ago

4.18 score 6 stars 5 scripts

Conversions - Collection of functions that convert certain RAW data in the LCBC database

Collection of functions that convert certain RAW data in the LCBC database.

Last updated 4 years ago

3.65 score 10 scripts

ggsegSchaefer - Schaefer datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Schaefer atlases to plot using functions from those two packages.

Last updated 3 years ago

3.42 score 11 stars 48 scripts

ggsegGlasser - Glasser datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Glasser atlases to plot using functions from those two packages.

Last updated 3 years ago

3.31 score 5 stars 81 scripts

colorhex - Colors and Palettes from Color-Hex

The website <https://www.color-hex.com> is a great resource of hex colour codes and palettes. This package allows you to retrieve palettes and colour information from the website directly from R. There are also custom scale-functions for 'ggplot2'.

Last updated 1 years ago

color-hexcolor-pickercolors

3.28 score 19 stars 4 scripts 45 downloads

lcbcr - LCBC brand package

Functions and setups with brand styling and lab general setups.

Last updated 3 years ago

3.00 score 2 scripts

noasr - NOAS convenience functions

Functions created to work well with LCBC's Nephew of All Spreadsheet data.

Last updated 4 years ago

3.00 score 4 scripts

uiothemes - Branding themes for the University of Oslo, Norway

Contains templates, themeing files and functions. Made specifically for branding purposes for the University of Oslo.

Last updated 4 years ago

brandinguio

2.85 score 14 stars 2 scripts

uiothemes - Branding themes for the University of Oslo, Norway

Contains templates, themeing files and functions. Made specifically for branding purposes for the University of Oslo.

Last updated 4 years ago

brandinguio

2.85 score 14 stars 2 scripts

ggsegYeo2011 - Yeo 2011 Datasets for the 'ggseg'-Package

This is a support package for the ggseg, and ggseg3d packages. It contains the Yeo 2011 atlases to plot using functions from those two packages.

Last updated 2 years ago

2.83 score 9 stars 15 scripts

gbhs - Lifebrain Global Brain Health Survey Data

Between June 2019 and August 2020, Lifebrain conducted the Global Brain Health Survey to collect data on people’s perceptions of brain health and willingness to take care of their brain by adopting new lifestyles. The survey was conducted online and translated into 14 languages to reach as many people as possible. In total, it collected 27,590 responses from people in 81 countries. This package contains code and data from this survey.

Last updated 2 years ago

2.78 score 1 stars 12 scripts

neuromat - Create Model Matrices for Neuroimaging Analyses

Neuroimaging software often requires the specification of model matrices to run analyses. These can be difficult to correctly. This package helps neuroscientists to create such This includes creating qdec-files for Freesurfer Linear Mixes Effects models.

Last updated 9 months ago

2.70 score 2 scripts

nettskjema.tsd - Decrypt and Organise Nettskjema Data Within TSD

Working with Nettskjema (<https://nettskjema.no/>) data inside TSD can be challenging. This package aims to aid users in managing their incoming Nettskjema data by decrypting the data and storing the nettskjema data and meta-data in convenient and standardised ways. This package functionality currently only works on the Linux VMs of TSD, and for version 1 of the nettskjema data delivery to TSD.

Last updated 2 years ago

2.70 score 3 scripts

ggsegBrodmann - brodmann datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the brodmann area atlases to plot using functions from those two packages.

Last updated 3 years ago

2.48 score 6 stars 3 scripts

ggsegJHU - JHU datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the JHU atlases to plot using functions from those two packages.

Last updated 3 years ago

2.40 score 5 stars 4 scripts

tidyquintro - Quick Intro to Tidyverse

A 4 hour workshop with quick introduction to tidyverse.

Last updated 2 years ago

2.38 score 3 stars 16 scripts

ggsegTracula - Tracula datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Tracula atlases to plot using functions from those two packages.

Last updated 11 months ago

2.30 score 4 stars 4 scripts

ggsegDesterieux - Desterieux datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Desterieux atlases to plot using functions from those two packages.

Last updated 3 years ago

2.26 score 2 stars 18 scripts

ggsegAicha - aicha datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the aicha atlases to plot using functions from those two packages.

Last updated 3 years ago

2.18 score 3 stars 2 scripts

ggsegBrainnetome - Brainnetome datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Brainnetome atlases to plot using functions from those two packages.

Last updated 3 years ago

2.18 score 3 stars 5 scripts

ggsegChen - Chen datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Chen atlases to plot using functions from those two packages.

Last updated 3 years ago

2.00 score 2 stars 2 scripts

ggsegHO - Harvard-Oxford datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Harvard-Oxford cortical atlases to plot using functions from those two packages.

Last updated 3 years ago

2.00 score 2 stars 5 scripts

ggsegDefaultExtra - Extra dk and aseg datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the extra dk and aseg, with some minor differences from the original atlases to plot using functions from those two packages.

Last updated 3 years ago

2.00 score 2 stars 4 scripts

ggsegICBM - ICBM datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the ICBM atlases to plot using functions from those two packages.

Last updated 2 years ago

1.70 score 1 stars 7 scripts

psykinematix - Utilities to work with data from Psykinematix Visual Psychophysics

Psykinematix Visual Psychophysics is a tool to develop and deploy psychophysical experiments. This packages enables the user to read in data from this tool into R for further processing.

Last updated 3 years ago

1.70 score 3 scripts

ggsegKleist - Kleist datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the historical Kleist atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 2 scripts

ggsegArslan - arslan datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the arslan atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 1 stars 2 scripts

ggsegFlechsig - Flechsig datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Flechsig atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 2 scripts

ggsegEconomo - economo datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the economo atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 1 stars 2 scripts

ggsegAal - aal datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the aal atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 1 stars 4 scripts

ggsegGordon - gordon datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the gordon atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 1 stars 10 scripts

ggsegCampbell - Campbell(1905) datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the Campbell (1905) atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 2 scripts

ggsegIca - ica datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the ica atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 1 stars 2 scripts

ggsegPower - power datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the power atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 2 scripts

ggsegDKT - Desikan-Killiany-Tourville datasets for the ggseg-plotting tool

This is a support package for the ggseg, and ggseg3d packages. It contains the DKT atlases to plot using functions from those two packages.

Last updated 3 years ago

1.70 score 1 stars 10 scripts

eprimeParser - LCBC E-prime data processing pipeline

This package contains functions to process the eprime data for LCBC. The functions are adaptations of scripts James Michael Roe made, that Athanasia Monika Mowinckel converted.

Last updated 5 years ago

1.70 score 1 scripts